Johnson, M.D., D.J. Beaudoin, M.J. Frada, E. F. Brownlee, D. K. Stoecker. 2018. High grazing rates on cryptophyte algae in Chesapeake Bay. Frontiers in Marine Science.
Brownlee, E.F., R.J. Olson, H.M. Sosik. 2016. Microzooplankton community structure investigated with imaging flow cytometry and automated live-cell staining. Marine Ecology Progress Series. 550:65-81.
Sosik, H.M., E.E. Peacock, E.F. Brownlee. 2015. Annotated plankton images-data set for developing and evaluating classification methods. http://hdl.handle.net/10.1575/1912/7341. DOI: 10.1575/1912/7341
Fischer, A.D., E.A. Moberg, H. Alexander, E.F. Brownlee, K.R. Hunter-Cevera, K.J. Pitz, S.Z. Rosengard, and H.M. Sosik. 2014. Sixty years of Sverdrup: A retrospective of progress in the study of phytoplankton blooms. Oceanography. 27(1): 222–235.
Arrigo K.R., D.K. Perovich, R.S. Pickart, Z.W. Brown, G.L. van Dijken, K. E., Lowry, M.M Mills, M.A. Palmer, W.M. Balch, N.R. Bates, C.R. Benitez-Nelson, E. Brownlee, K.E. Frey, S.R. Laney, J. Mathis, A. Matsuoka, G.B. Mitchell, G.W.K. Moore, R.A. Reynolds, H.M. Sosik, J.H. Swift . 2014. Phytoplankton blooms beneath the sea ice in the Chukchi sea. Deep Sea Research Part II Topical Studies in Oceanography. 105:1–16.
Arrigo, K.R. D.K. Perovich, R.S. Pickart, Z.W. Brown, G.L. van Dijken, K.E. Lowry, M.M. Mills, M.A. Palmer, W.M. Balch, F. Bahr, N.R. Bates, C. Benitez-Nelson, B. Bowler, E. Brownlee, J.K. Ehn, K.E. Frey, R. Garley, S.R. Laney, L. Lubelczyk, J. Mathis, A. Matsuoka, B.G. Mitchell, G.W.K. Moore, E. Ortega-Retuerta, S. Pal, C.M. Polashenski, R. Reynolds, B. Schieber, H.M. Sosik, M. Stephens, and J.H. Swift. 2012. Massive phytoplankton blooms under Arctic Sea ice. Science 336: 1408.
Brownlee, E.F., S.G. Sellner, K.G. Sellner. 2008. Potential role of clay in mitigating Chesapeake Bay algal blooms. In: Ø. Moestrup & H. Enevoldsen (eds.), Proc. of the 12th International Symposium on Harmful Algae.
Place, A.R., E.F. Brownlee, H. Nonogaki, J.E. Adolf, T.R. Bachvaroff, S.G. Sellner, K.G. Sellner. 2008. Responses of bivalve molluscs to the ichthyotoxic dinoflagellate Karlodinium veneficum. In: Ø. Moestrup & H. Enevoldsen (eds.), Proc. of the 12th International Symposium on Harmful Algae.
Brownlee, E.F., S.G. Sellner, K.G. Sellner, H. Nonogaki, J.E. Adolf, T.R. Bachvaroff, and A.R. Place. 2008. Responses of Crassostrea virginica (Gmelin) and C. ariakensis (Fujita) to bloom-forming phytoplankton including ichthyotoxic Karlodinium veneficum (Ballantine). J. Shellfish Res. 27: 581-591.
Brownlee, E.F. 2006. A tale of two oysters: The Chesapeake Bay native (Crassostrea virginica) and the non-native (Crassostrea ariakensis) oysters and the effects of an increasing water quality problem, algal blooms-A vital management issue for the Chesapeake Bay. In: Journal of the U.S. Stockholm Junior Water Prize For the Future, From the Future.
Brownlee, E.F. 2005. The use of clay to remove algal blooms from Chesapeake Bay waters. Proceedings of the Oceans 2005 Conference, September, 2005. Washington. D.C.
Brownlee, E.F, S.G. Sellner and K.G. Sellner. 2005. Prorocentrum minimum blooms: Potential impacts on dissolved oxygen and Chesapeake Bay oyster settlement and growth. Harmful Algae 4(3): 593-602.
Brownlee, E.F, S.G. Sellner and K.G. Sellner. 2003. Effects of barley straw (Hordeum vulgare) on freshwater and brackish phytoplankton and cyanobacteria. J. Applied Phycology 15: 525-531.
Manuscripts in Preparation
Brownlee, E.F., M. Johnson, D. Beaudoin, R. M. Gast, R.J. Olson, H.M. Sosik. (in prep) Seasonal size distributions of the mixotrophic ciliate, Mesodinium, controlled by temperature and genetic composition. Limnology and Oceanography.
Brownlee, E.F., R.J. Gast, R.J. Olson, H.M. Sosik. (in prep). Seasonality in ciliate communities characterized by morphotype and genotype.
Emily Brownlee 